Enterprise Applications Analyst

Who We Are Flagship Pioneering is a biotechnology company that invents and builds platform companies that change the world. We bring together the greatest scientific minds with entrepreneurial company builders and assemble the capital to allow them to take courageous leaps. Those big leaps in human health and sustainability exponentially accelerate scientific progress in areas ranging from cancer detection and treatment to nature-positive agriculture. What sets Flagship apart is our ability to advance biotechnology by uniting life science innovation, company creation, and capital investment under one roof in a way that is largely without precedent. Our scientific founders, entrepreneurial leaders, and professional capital managers are each aligned around an institutionalized process that enables us to innovate and transform for the benefit of people and planet. Many of the companies Flagship has founded have addressed humanity’s most urgent challenges: vaccinating billions of people against COVID-19, curing intractable diseases, improving human health, preempting illness, and feeding the world by improving the resiliency and sustainability of agriculture. Flagship has been recognized twice on FORTUNE’s “Change the World” list, an annual ranking of companies that have made a positive social and environmental impact through activities that are part of their core business strategies, and has been twice named to Fast Company’s annual list of the World’s Most Innovative Companies. THE ROLE We are seeking a detail-oriented Enterprise Applications Analyst to support the Enterprise Applications team in documenting, managing, optimizing, and evolving Flagship’s business systems landscape. This role will assist with operational support, requirements gathering, reporting, diagraming, and system improvements while also supporting architectural initiatives such as application evaluations, integration support, and documentation of system designs. The analyst will work closely with the Director of Enterprise Applications and cross-functional stakeholders to ensure systems such as UKG, NetSuite, Greenhouse, Cobblestone, Coupa, Notion, and ADP operate effectively and continue to align with business needs. This role bridges business operations and technical architecture, helping translate business requirements into system improvements and supporting the broader enterprise applications strategy. KEY RESPONSIBILITIES Business Analysis Application Support Support day-to-day operations and troubleshooting across enterprise applications including HCM, ERP, ATS, CLM, Procurement, and Payroll platforms. Gather, document, and validate business requirements for system enhancements and integrations. Partner with stakeholders across HR, Finance, Procurement, and IT to understand system needs and process improvements. Assist with testing, configuration validation, and user acceptance testing for system changes and releases. Provide end-user documentation, training, and ongoing support for enterprise systems. Architecture System Design Support Assist the Director, Enterprise Applications with architecture and technical design activities, including: Documenting system architectures, data flows, and integration patterns across enterprise platforms. Supporting technical evaluations of new software requests using defined architecture criteria. Assisting with system integration documentation and configuration validation. Supporting integration development efforts using tools such as Workato or Power Platform. Helping maintain architectural standards, system documentation, and technical diagrams. Professional Experience Qualifications Required Bachelor’s degree in Information Systems, Business, Computer Science, or related field. 3+ years of experience in a Business Analyst, Systems Analyst, or Enterprise Applications support role. Experience supporting enterprise SaaS platforms such as HCM, ERP, ATS, procurement, or finance systems. ... (truncated, view full listing at source)